{"created":"2023-06-20T13:24:14.398291+00:00","id":5634,"links":{},"metadata":{"_buckets":{"deposit":"93ed6598-fe74-4c4b-9d0c-55371cfc6338"},"_deposit":{"created_by":24,"id":"5634","owners":[24],"pid":{"revision_id":0,"type":"depid","value":"5634"},"status":"published"},"_oai":{"id":"oai:ir.soken.ac.jp:00005634","sets":["1:285","1:345","1:358:495"]},"author_link":["7288","7286","7289","7311","7293","7312","7290","7292","7291","7294","7287","7310"],"item_10001_biblio_info_7":{"attribute_name":"書誌情報","attribute_value_mlt":[{"bibliographicIssueDates":{"bibliographicIssueDate":"2017-04-05","bibliographicIssueDateType":"Issued"},"bibliographicIssueNumber":"4","bibliographicPageStart":"e0173147","bibliographicVolumeNumber":"12","bibliographic_titles":[{"bibliographic_title":"PLoS ONE"},{"bibliographic_title":"PLoS ONE","bibliographic_titleLang":"en"}]}]},"item_10001_creator_3":{"attribute_name":"著者別名","attribute_type":"creator","attribute_value_mlt":[{"creatorNames":[{"creatorName":"DHARMAYANTHI, Anik Budhi"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"TERAI, Yohei"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"SULANDARI, Sri"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"ZEIN, M Syamsul Arifin"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"AKIYAMA, Toyoko"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"SATTA, Yoko"}],"nameIdentifiers":[{}]}]},"item_10001_description_5":{"attribute_name":"抄録","attribute_value_mlt":[{"subitem_description":"Like Chinese Silkie, Indonesian Ayam Cemani exhibits fibromelanosis or dermal hyperpigmentation and possesses complex segmental duplications on chromosome 20 that involve the endothelin 3 gene, EDN3. A genomic region, DR1 of 127 kb, together with another region, DR2 of 171 kb, was duplicated by unequal crossing over, accompanied by inversion of one DR2. Quantitative PCR and copy number variation analyses on the Cemani genome sequence confirmed the duplication of EDN3. These genetic arrangements are identical in Cemani and Silkie, indicating a single origin of the genetic cause of Fm. The two DR1s harbor two distinct EDN3 haplotypes in a form of permanent heterozygosity, although they remain allelic in the ancestral Red Jungle Fowl population and some domesticated chicken breeds, with their allelic divergence time being as recent as 0.3 million years ago. In Cemani and Silkie breeds, artificial selection favoring the Fm phenotype has left an unambiguous record for selective sweep that extends in both directions from tandemly duplicated EDN3 loci. This highly homozygous tract is different in length between Cemani and Silkie, reflecting their distinct breeding histories. It is estimated that the Fm phenotype came into existence at least 6600-9100 years ago, prior to domestication of Cemani and Silkie, and that throughout domestication there has been intense artificial selection with strength s > 50% in each breed.","subitem_description_type":"Abstract"}]},"item_10001_link_33":{"attribute_name":"PubMed番号","attribute_value_mlt":[{"subitem_link_text":"28379963","subitem_link_url":"https://www.ncbi.nlm.nih.gov/pubmed/?term=28379963"}]},"item_10001_link_34":{"attribute_name":"PMC番号","attribute_value_mlt":[{"subitem_link_text":"PMC5381777","subitem_link_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5381777/"}]},"item_10001_publisher_8":{"attribute_name":"出版者","attribute_value_mlt":[{"subitem_publisher":"Public Library of Science / San Francisco, CA"}]},"item_10001_relation_14":{"attribute_name":"DOI","attribute_value_mlt":[{"subitem_relation_name":[{"subitem_relation_name_text":"10.1371/journal.pone.0173147 ＜PLoS ONE Open Access Full Text＞"}],"subitem_relation_type":"isIdenticalTo","subitem_relation_type_id":{"subitem_relation_type_id_text":"http://dx.doi.org/10.1371/journal.pone.0173147","subitem_relation_type_select":"DOI"}}]},"item_10001_relation_17":{"attribute_name":"関連サイト","attribute_value_mlt":[{"subitem_relation_name":[{"subitem_relation_name_text":"Archive of PLoS ONE ＜PMC Journal List＞ "}],"subitem_relation_type_id":{"subitem_relation_type_id_text":"https://www.ncbi.nlm.nih.gov/pmc/journals/440/","subitem_relation_type_select":"URI"}},{"subitem_relation_name":[{"subitem_relation_name_text":"About PLoS ONE ＜Public Library of Science＞"}],"subitem_relation_type_id":{"subitem_relation_type_id_text":"http://journals.plos.org/plosone/s/journal-information","subitem_relation_type_select":"URI"}}]},"item_10001_rights_31":{"attribute_name":"権利","attribute_value_mlt":[{"subitem_rights":"© 2017 Dharmayanthi et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. | http://journals.plos.org/plosone/s/licenses-and-copyright"}]},"item_10001_source_id_26":{"attribute_name":"Online ISSN","attribute_value_mlt":[{"subitem_source_identifier":"1932-6203","subitem_source_identifier_type":"ISSN"}]},"item_10001_text_23":{"attribute_name":"著者注記","attribute_value_mlt":[{"subitem_text_value":"Anik Budhi, Dharmayanthi：Department of Evolutionary Studies of Biosystems, SOKENDAI (The Graduate University for Advanced Studies)"},{"subitem_text_value":"Yohei, Terai：Department of Evolutionary Studies of Biosystems, SOKENDAI (The Graduate University for Advanced Studies) *(Assistant Professor）"},{"subitem_text_value":"Yoko, Satta：Department of Evolutionary Studies of Biosystems, SOKENDAI (The Graduate University for Advanced Studies) *(Professor)"}]},"item_10001_text_25":{"attribute_name":"雑誌情報","attribute_value_mlt":[{"subitem_text_value":"Publication Start Year : 2006 "},{"subitem_text_value":"Frequency : Monthly"},{"subitem_text_value":"A Peer-Reviewed, Open Access Journal, Electronic only"}]},"item_10001_version_type_20":{"attribute_name":"著者版フラグ","attribute_value_mlt":[{"subitem_version_resource":"http://purl.org/coar/version/c_970fb48d4fbd8a85","subitem_version_type":"VoR"}]},"item_creator":{"attribute_name":"著者","attribute_type":"creator","attribute_value_mlt":[{"creatorNames":[{"creatorName":"DHARMAYANTHI, Anik Budhi"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"TERAI, Yohei"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"SULANDARI, Sri"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"ZEIN, M Syamsul Arifin"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"AKIYAMA, Toyoko"}],"nameIdentifiers":[{}]},{"creatorNames":[{"creatorName":"SATTA, Yoko"}],"nameIdentifiers":[{}]}]},"item_files":{"attribute_name":"ファイル情報","attribute_type":"file","attribute_value_mlt":[{"accessrole":"open_date","date":[{"dateType":"Available","dateValue":"2017-07-19"}],"displaytype":"detail","filename":"anikfile.pdf","filesize":[{"value":"3.1 MB"}],"format":"application/pdf","licensetype":"license_11","mimetype":"application/pdf","url":{"label":"本文 / Article","url":"https://ir.soken.ac.jp/record/5634/files/anikfile.pdf"},"version_id":"af0a3b70-9b82-45c0-a798-4a41d1c175d4"}]},"item_language":{"attribute_name":"言語","attribute_value_mlt":[{"subitem_language":"eng"}]},"item_resource_type":{"attribute_name":"資源タイプ","attribute_value_mlt":[{"resourcetype":"journal article","resourceuri":"http://purl.org/coar/resource_type/c_6501"}]},"item_title":"The origin and evolution of fibromelanosis in domesticated chickens: Genomic comparison of Indonesian Cemani and Chinese Silkie breeds.","item_titles":{"attribute_name":"タイトル","attribute_value_mlt":[{"subitem_title":"The origin and evolution of fibromelanosis in domesticated chickens: Genomic comparison of Indonesian Cemani and Chinese Silkie breeds."},{"subitem_title":"The origin and evolution of fibromelanosis in domesticated chickens: Genomic comparison of Indonesian Cemani and Chinese Silkie breeds.","subitem_title_language":"en"}]},"item_type_id":"10001","owner":"24","path":["285","345","495"],"pubdate":{"attribute_name":"公開日","attribute_value":"2017-07-19"},"publish_date":"2017-07-19","publish_status":"0","recid":"5634","relation_version_is_last":true,"title":["The origin and evolution of fibromelanosis in domesticated chickens: Genomic comparison of Indonesian Cemani and Chinese Silkie breeds."],"weko_creator_id":"24","weko_shared_id":-1},"updated":"2023-06-20T15:03:58.071672+00:00"}