| Item type |
学術雑誌論文 / Journal Article(1) |
| 公開日 |
2014-06-10 |
| タイトル |
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|
タイトル |
QTL Map Meets Population Genomics: An Application to Rice |
| タイトル |
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タイトル |
QTL Map Meets Population Genomics: An Application to Rice |
|
言語 |
en |
| 言語 |
|
|
言語 |
eng |
| 資源タイプ |
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資源タイプ識別子 |
http://purl.org/coar/resource_type/c_6501 |
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資源タイプ |
journal article |
| 著者 |
FAWCETT, Jeffrey A
TAKUNO, Shohei
INNAN, Hideki
et, al.
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| 著者別名 |
印南, 秀樹
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| 抄録 |
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内容記述タイプ |
Abstract |
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内容記述 |
Genes involved in the transition from wild to cultivated crop species should be of great agronomic importance. Population genomic approaches utilizing genome resequencing data have been recently applied for this purpose, although it only reports a large list of candidate genes with no biological information. Here, by resequencing more than 30 genomes altogether of wild rice Oryza rufipogon and cultivated rice O. sativa, we identified a number of regions with clear footprints of selection during the domestication process. We then focused on identifying candidate domestication genes in these regions by utilizing the wealth of QTL information in rice. We were able to identify a number of interesting candidates such as transcription factors that should control key domestication traits such as shattering, awn length, and seed dormancy. Other candidates include those that might have been related to the improvement of grain quality and those that might have been involved in the local adaptation to dry conditions and colder environments. Our study shows that population genomic approaches and QTL mapping information can be used together to identify genes that might be of agronomic importance. |
| 書誌情報 |
PLoS One
en : PLoS One
巻 8,
号 12,
p. e83720,
発行日 2013-12
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| 出版者 |
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出版者 |
Public Library of Science |
| ISSN |
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収録物識別子タイプ |
ISSN |
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収録物識別子 |
1932-6203 |
| DOI |
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関連タイプ |
isIdenticalTo |
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識別子タイプ |
DOI |
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関連識別子 |
https://doi.org/10.1371/journal.pone.0083720 |
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関連名称 |
10.1371/journal.pone.0083720 |
| 権利 |
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権利情報 |
© 2013 Fawcett et al. |
| 関連サイト |
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識別子タイプ |
URI |
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関連識別子 |
http://www.plos.org/open-access/ |
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関連名称 |
Copyright |
| フォーマット |
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内容記述タイプ |
Other |
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内容記述 |
application/pdf |
| 著者版フラグ |
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出版タイプ |
VoR |
|
出版タイプResource |
http://purl.org/coar/version/c_970fb48d4fbd8a85 |
fetchObject2 (2.0 MB)
